% clear everything
clear;
pack;
close all;
close all hidden;
drawnow;
clc;
% initialization
ims=dir('./*.jpg');
imgs={};
images={};
blur_images={};
log_image={};
dilated_image={};
int_image={};
bin_image={};
measurements={};
box={};
num=length(ims);
thres_div = 3;
for i=1:num,
% load original image
imgs{end+1}=imread(ims(i).name);
% convert to grayscale
images{end+1}=rgb2gray(imgs{i});
% apply laplacian filtering and heuristic hard thresholding
val_thres = (max(max(images{i}))/thres_div);
log_image{end+1} = imfilter( images{i},fspecial('log')) > val_thres;
% get the most bright regions of the image
int_thres = 0.26*max(max( images{i}));
int_image{end+1} = images{i} > int_thres;
% compute the final binary image by combining
% high 'activity' with high intensity
bin_image{end+1} = log_image{i} .* int_image{i};
% apply morphological dilation to connect distonnected components
strel_size = round(0.01*max(size(imgs{i}))); % structuring element for morphological dilation
dilated_image{end+1} = imdilate( bin_image{i}, strel('disk',strel_size));
% do some measurements to eliminate small objects
measurements{i} = regionprops( logical( dilated_image{i}),'Area','BoundingBox');
for m=1:length(measurements{i})
if measurements{i}(m).Area < 0.05*numel( dilated_image{i})
dilated_image{i}( round(measurements{i}(m).BoundingBox(2):measurements{i}(m).BoundingBox(4)+measurements{i}(m).BoundingBox(2)),...
round(measurements{i}(m).BoundingBox(1):measurements{i}(m).BoundingBox(3)+measurements{i}(m).BoundingBox(1))) = 0;
end
end
% make sure the dilated image is the same size with the original
dilated_image{i} = dilated_image{i}(1:size(imgs{i},1),1:size(imgs{i},2));
% compute the bounding box
[y,x] = find( dilated_image{i});
if isempty( y)
box{end+1}=[];
else
box{end+1} = [ min(x) min(y) max(x)-min(x)+1 max(y)-min(y)+1];
end
end
%%% additional code to display things
for i=1:num,
figure;
subplot(121);
colormap gray;
imshow( imgs{i});
if ~isempty(box{i})
hold on;
rr = rectangle( 'position', box{i});
set( rr, 'EdgeColor', 'r');
hold off;
end
subplot(122);
imshow( imgs{i}.*uint8(repmat(dilated_image{i},[1 1 3])));
end
[centroids, idx] = runkMeans(X, initial_centroids, max_iters);
mask=reshape(idx,img_size(1),img_size(2));
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [centroids, idx] = runkMeans(X, initial_centroids, ...
max_iters, plot_progress)
[m n] = size(X);
K = size(initial_centroids, 1);
centroids = initial_centroids;
previous_centroids = centroids;
idx = zeros(m, 1);
for i=1:max_iters
% For each example in X, assign it to the closest centroid
idx = findClosestCentroids(X, centroids);
% Given the memberships, compute new centroids
centroids = computeCentroids(X, idx, K);
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function idx = findClosestCentroids(X, centroids)
K = size(centroids, 1);
idx = zeros(size(X,1), 1);
for xi = 1:size(X,1)
x = X(xi, :);
% Find closest centroid for x.
best = Inf;
for mui = 1:K
mu = centroids(mui, :);
d = dot(x - mu, x - mu);
if d < best
best = d;
idx(xi) = mui;
end
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function centroids = computeCentroids(X, idx, K)
[m n] = size(X);
centroids = zeros(K, n);
for mui = 1:K
centroids(mui, :) = sum(X(idx == mui, :)) / sum(idx == mui);
end
由于程序在我的计算机中运行非常慢,我只运行了3次迭代。通常停止
准则是(i)迭代时间至少10次,或(ii)质心不再发生变化。来
我的测试,增加迭代可能会区分背景(天空和树,天空和
建筑,…)更准确,但没有显示出急剧变化的圣诞树
提取。还要注意,k-means也不受随机质心初始化的影响,因此建议多次运行程序进行比较。< / p >
% clear everything
clear;
pack;
close all;
close all hidden;
drawnow;
clc;
% initialization
ims=dir('./*.jpg');
imgs={};
images={};
blur_images={};
log_image={};
dilated_image={};
int_image={};
back_image={};
bin_image={};
measurements={};
box={};
num=length(ims);
thres_div = 3;
for i=1:num,
% load original image
imgs{end+1}=imread(ims(i).name);
% convert to HSV colorspace
images{end+1}=rgb2hsv(imgs{i});
% apply laplacian filtering and heuristic hard thresholding
val_thres = (max(max(images{i}(:,:,3)))/thres_div);
log_image{end+1} = imfilter( images{i}(:,:,3),fspecial('log')) > val_thres;
% get the most bright regions of the image
int_thres = 0.26*max(max( images{i}(:,:,3)));
int_image{end+1} = images{i}(:,:,3) > int_thres;
% get the most probable background regions of the image
back_image{end+1} = images{i}(:,:,1)>(150/360) & images{i}(:,:,1)<(320/360) & images{i}(:,:,3)<0.5;
% compute the final binary image by combining
% high 'activity' with high intensity
bin_image{end+1} = logical( log_image{i}) & logical( int_image{i}) & ~logical( back_image{i});
% apply morphological dilation to connect distonnected components
strel_size = round(0.01*max(size(imgs{i}))); % structuring element for morphological dilation
dilated_image{end+1} = imdilate( bin_image{i}, strel('disk',strel_size));
% do some measurements to eliminate small objects
measurements{i} = regionprops( logical( dilated_image{i}),'Area','BoundingBox');
% iterative enlargement of the structuring element for better connectivity
while length(measurements{i})>14 && strel_size<(min(size(imgs{i}(:,:,1)))/2),
strel_size = round( 1.5 * strel_size);
dilated_image{i} = imdilate( bin_image{i}, strel('disk',strel_size));
measurements{i} = regionprops( logical( dilated_image{i}),'Area','BoundingBox');
end
for m=1:length(measurements{i})
if measurements{i}(m).Area < 0.05*numel( dilated_image{i})
dilated_image{i}( round(measurements{i}(m).BoundingBox(2):measurements{i}(m).BoundingBox(4)+measurements{i}(m).BoundingBox(2)),...
round(measurements{i}(m).BoundingBox(1):measurements{i}(m).BoundingBox(3)+measurements{i}(m).BoundingBox(1))) = 0;
end
end
% make sure the dilated image is the same size with the original
dilated_image{i} = dilated_image{i}(1:size(imgs{i},1),1:size(imgs{i},2));
% compute the bounding box
[y,x] = find( dilated_image{i});
if isempty( y)
box{end+1}=[];
else
box{end+1} = [ min(x) min(y) max(x)-min(x)+1 max(y)-min(y)+1];
end
end
%%% additional code to display things
for i=1:num,
figure;
subplot(121);
colormap gray;
imshow( imgs{i});
if ~isempty(box{i})
hold on;
rr = rectangle( 'position', box{i});
set( rr, 'EdgeColor', 'r');
hold off;
end
subplot(122);
imshow( imgs{i}.*uint8(repmat(dilated_image{i},[1 1 3])));
end
from PIL import Image
import numpy as np
import scipy as sp
import matplotlib.colors as colors
from sklearn.cluster import DBSCAN
from math import ceil, sqrt
"""
Inputs:
rgbimg: [M,N,3] numpy array containing (uint, 0-255) color image
hueleftthr: Scalar constant to select maximum allowed hue in the
yellow-green region
huerightthr: Scalar constant to select minimum allowed hue in the
blue-purple region
satthr: Scalar constant to select minimum allowed saturation
valthr: Scalar constant to select minimum allowed value
monothr: Scalar constant to select minimum allowed monochrome
brightness
maxpoints: Scalar constant maximum number of pixels to forward to
the DBSCAN clustering algorithm
proxthresh: Proximity threshold to use for DBSCAN, as a fraction of
the diagonal size of the image
Outputs:
borderseg: [K,2,2] Nested list containing K pairs of x- and y- pixel
values for drawing the tree border
X: [P,2] List of pixels that passed the threshold step
labels: [Q,2] List of cluster labels for points in Xslice (see
below)
Xslice: [Q,2] Reduced list of pixels to be passed to DBSCAN
"""
def findtree(rgbimg, hueleftthr=0.2, huerightthr=0.95, satthr=0.7,
valthr=0.7, monothr=220, maxpoints=5000, proxthresh=0.04):
# Convert rgb image to monochrome for
gryimg = np.asarray(Image.fromarray(rgbimg).convert('L'))
# Convert rgb image (uint, 0-255) to hsv (float, 0.0-1.0)
hsvimg = colors.rgb_to_hsv(rgbimg.astype(float)/255)
# Initialize binary thresholded image
binimg = np.zeros((rgbimg.shape[0], rgbimg.shape[1]))
# Find pixels with hue<0.2 or hue>0.95 (red or yellow) and saturation/value
# both greater than 0.7 (saturated and bright)--tends to coincide with
# ornamental lights on trees in some of the images
boolidx = np.logical_and(
np.logical_and(
np.logical_or((hsvimg[:,:,0] < hueleftthr),
(hsvimg[:,:,0] > huerightthr)),
(hsvimg[:,:,1] > satthr)),
(hsvimg[:,:,2] > valthr))
# Find pixels that meet hsv criterion
binimg[np.where(boolidx)] = 255
# Add pixels that meet grayscale brightness criterion
binimg[np.where(gryimg > monothr)] = 255
# Prepare thresholded points for DBSCAN clustering algorithm
X = np.transpose(np.where(binimg == 255))
Xslice = X
nsample = len(Xslice)
if nsample > maxpoints:
# Make sure number of points does not exceed DBSCAN maximum capacity
Xslice = X[range(0,nsample,int(ceil(float(nsample)/maxpoints)))]
# Translate DBSCAN proximity threshold to units of pixels and run DBSCAN
pixproxthr = proxthresh * sqrt(binimg.shape[0]**2 + binimg.shape[1]**2)
db = DBSCAN(eps=pixproxthr, min_samples=10).fit(Xslice)
labels = db.labels_.astype(int)
# Find the largest cluster (i.e., with most points) and obtain convex hull
unique_labels = set(labels)
maxclustpt = 0
for k in unique_labels:
class_members = [index[0] for index in np.argwhere(labels == k)]
if len(class_members) > maxclustpt:
points = Xslice[class_members]
hull = sp.spatial.ConvexHull(points)
maxclustpt = len(class_members)
borderseg = [[points[simplex,0], points[simplex,1]] for simplex
in hull.simplices]
return borderseg, X, labels, Xslice
第二部分是一个用户级脚本,它调用第一个文件并生成上面所有的图:
#!/usr/bin/env python
from PIL import Image
import numpy as np
import matplotlib.pyplot as plt
import matplotlib.cm as cm
from findtree import findtree
# Image files to process
fname = ['nmzwj.png', 'aVZhC.png', '2K9EF.png',
'YowlH.png', '2y4o5.png', 'FWhSP.png']
# Initialize figures
fgsz = (16,7)
figthresh = plt.figure(figsize=fgsz, facecolor='w')
figclust = plt.figure(figsize=fgsz, facecolor='w')
figcltwo = plt.figure(figsize=fgsz, facecolor='w')
figborder = plt.figure(figsize=fgsz, facecolor='w')
figthresh.canvas.set_window_title('Thresholded HSV and Monochrome Brightness')
figclust.canvas.set_window_title('DBSCAN Clusters (Raw Pixel Output)')
figcltwo.canvas.set_window_title('DBSCAN Clusters (Slightly Dilated for Display)')
figborder.canvas.set_window_title('Trees with Borders')
for ii, name in zip(range(len(fname)), fname):
# Open the file and convert to rgb image
rgbimg = np.asarray(Image.open(name))
# Get the tree borders as well as a bunch of other intermediate values
# that will be used to illustrate how the algorithm works
borderseg, X, labels, Xslice = findtree(rgbimg)
# Display thresholded images
axthresh = figthresh.add_subplot(2,3,ii+1)
axthresh.set_xticks([])
axthresh.set_yticks([])
binimg = np.zeros((rgbimg.shape[0], rgbimg.shape[1]))
for v, h in X:
binimg[v,h] = 255
axthresh.imshow(binimg, interpolation='nearest', cmap='Greys')
# Display color-coded clusters
axclust = figclust.add_subplot(2,3,ii+1) # Raw version
axclust.set_xticks([])
axclust.set_yticks([])
axcltwo = figcltwo.add_subplot(2,3,ii+1) # Dilated slightly for display only
axcltwo.set_xticks([])
axcltwo.set_yticks([])
axcltwo.imshow(binimg, interpolation='nearest', cmap='Greys')
clustimg = np.ones(rgbimg.shape)
unique_labels = set(labels)
# Generate a unique color for each cluster
plcol = cm.rainbow_r(np.linspace(0, 1, len(unique_labels)))
for lbl, pix in zip(labels, Xslice):
for col, unqlbl in zip(plcol, unique_labels):
if lbl == unqlbl:
# Cluster label of -1 indicates no cluster membership;
# override default color with black
if lbl == -1:
col = [0.0, 0.0, 0.0, 1.0]
# Raw version
for ij in range(3):
clustimg[pix[0],pix[1],ij] = col[ij]
# Dilated just for display
axcltwo.plot(pix[1], pix[0], 'o', markerfacecolor=col,
markersize=1, markeredgecolor=col)
axclust.imshow(clustimg)
axcltwo.set_xlim(0, binimg.shape[1]-1)
axcltwo.set_ylim(binimg.shape[0], -1)
# Plot original images with read borders around the trees
axborder = figborder.add_subplot(2,3,ii+1)
axborder.set_axis_off()
axborder.imshow(rgbimg, interpolation='nearest')
for vseg, hseg in borderseg:
axborder.plot(hseg, vseg, 'r-', lw=3)
axborder.set_xlim(0, binimg.shape[1]-1)
axborder.set_ylim(binimg.shape[0], -1)
plt.show()